Incontro Plenario ICSC Spoke 8

24 Jun 2024, 14:00 → 25 Jun 2024, 19:00 Europe/Rome

Fibonacci (CINECA)

Andrea Cavalli (IIT), Francesco Pappalardo

Incontro semestrale plenario di ICSC Spoke8 "Insilico medicine and omics data"

Link per collegamento da remoto: 

https://teams.microsoft.com/l/meetup-join/19%3ameeting_ZDA0ZTAyMmItMjdlNi00OWYwLWI3N2UtMGJmMWU2ZDJlOTBj%40thread.v2/0?context=%7b%22Tid%22%3a%22c5492249-84a0-43af-bd29-a7892e94b5b7%22%2c%22Oid%22%3a%220a8d695b-9dc6-436d-9bc0-df856eeed29b%22%7d

Monday, 24 June

14:00 → 14:15 Arrivo e registrazione partecipanti

14:15 → 14:30 Saluti Andrea Cavalli – Spoke Leader

14:30 → 16:00 WP4 Genome bioinformatics pipelines for GPU-based HPC infrastructures

Convener: Chiara Romualdi (UniPD)

presentazioneUNIPD_21_06_2024.pdf

14:30 sgdGMF: a new scalable matrix factorization framework for high-dimensional omics data

Speaker: Cristian Castiglione (UniPD)

Castiglione.pdf

14:55 Dissecting tumor transcriptional heterogeneity using single-cell RNA-seq data

Speaker: Raffaele Calogero (UniTO)

calogero_v1.pptx

15:15 Integration of scRNAseq datasets for studying cellular heterogeneity in solid tumors

Speaker: Stefano Volinia (UniFE)

24giugno2024.pdf

15:40 Inosinome profiling by high-throughput sequencing

Speaker: Ernesto Picardi (UniBA)

spoke8_HPC_bologna_24_6_2024_picardi.pptx

16:00 → 16:30 Coffee Break

16:30 → 18:00 WP5 Development of clinical machine learning algorithms for EHRs and omics data (including radiomics)

Convener: Luigi Terracciano (Humanitas)

WP5.pptx

16:30 Health Data Platform to unraveling the Genetic Complexity to define Novel Therapeutic Targets in Visceral Cancer

Speaker: Antonino Marsala (Humanitas)

Humanitas_Data_Lake_update_CN1.pptx

16:42 Patients-derived models as tool for personalized oncology

Speaker: Salvatore Piscuoglio (Humanitas)

16:54 Genomic Insights into Pancreatic Cancer of an Italian Patient Cohort

Speaker: Federica Furia (IIT)

PDAC-Furia.pptx

17:06 Multi-omics prognostic analysis for PDA patients

Speakers: Gian Maria Zaccaria (PoliBA), Vitoantonio Bevilacqua (PoliBA)

17:18 Enhancing ML models by synthetic omics data: recent advancements in generative AI for medical tabular data

Speaker: Marco Chierici (FBK)

WP5_chierici_1.pptx

WP5_chierici_2.pptx

17:30 AI-Driven Holistic Healthcare Platform for Genomics and Digital Pathology

Speaker: Antonio De Nigro (Engineerig)

Plenary Bologna ENG_v2.pdf

17:42 Radiomics and AI techniques: selected experimental results on medical images of lung cancer, neurological diseases and COVID-19

Speaker: Francesca Brero (UniPV)

Bologna_24June2024.pdf

18:00 → 19:30 WP6 Drug-target studies and drug repurposing

Convener: Giorgio Colombo

BOLOGNA-24-06-24-COLOMBO.pptx

18:00 Structural mechanisms underlying human diseases: the case of KCTD1

Speaker: Luigi Vitagliano (CNR)

Vitagliano_Riunionespoke8_final.pptm

18:25 Drug-target studies and drug repurposing

Speaker: Francesco Musiani (UniBO)

Musiani_240624_WP6_Task6.2_noMovie.pptx

18:50 Exploring the POLE variant F695V as a drug target/biomarker to unveil novel therapeutic strategies in cancer

Speakers: Fabio Landuzzi (IIT), Manuela Vecchi (IIT)

Ppt_POLE_Spoke8_Meeting24-25June2024_Combined_MV_FL.pptx

19:10 Large Language Models per l’analisi di profili mutazionali e modelli di drug repurposing ad alte prestazioni

Speaker: Antonio Di Maria (UniCT)

WP6_Di Maria.pptx

Tuesday, 25 June

10:00 → 10:15 Arrivo e registrazione presenze

10:15 → 11:00 Saluti della fondazione ICSC

Speakers: Alessia D'Orazio (Fondazione ICSC), Davide Salomoni (Fondazione ICSC), Matteo Zanaroli (Fondazione ICSC)

20240625 Davide Salomoni Spoke 8.pdf

Spoke8-meeting-25Giu2024.pdf

Zanaroli - Spoke 8.pptx

11:00 → 11:30 WP1 Implementation of modelling & simulation platforms (open source and commercial) through HPC solvers: WP1

Convener: Francesco Pappalardo

pres SP8-WP1_Giugno24.pptx

UISS_FLU_GIU24.pptx

11:30 → 12:00 Coffee break

12:00 → 13:30 WP3 Integrated digital data flow between clinics and HPC centres and Easy-to-use GUI for HPC solvers

Convener: Barbara Martelli (INFN)

20240625-plenaria-ICSC-Spoke8-stato del-WP3.pdf

12:00 Roadmap generale per l'integrazione delle piattaforme cloud Spoke8 e Spoke0

Speaker: Giacinto Donvito (INFN Bari)

Donvito_Spoke0_8.pdf

12:15 Roadmap per l'integrazione delle piattaforme cloud Spoke8 e Spoke0- focus su gestione delle identità

Speaker: Francesco Giacomini (INFN CNAF)

ICSC-Spoke8 Gestione Identità e Accessi.pdf

12:30 Storage federation in DataCloud - integration roadmap between Spoke0 and Spoke8

Speaker: Antonino Troja (INFN Padova)

Talk-WP3Troja.pdf

12:45 Aggiornamento sulla piattaforma omics

Speaker: Elisa Rossi (CINECA)

20240624-ICSC-Spoke8_OMICS_template (1).pdf

13:00 Integrating Universal Immune System Simulator in a Cloud, GDPR compliant, environment

Speakers: Riccardo Rotondo (INFN Catania), Valentina Ientile (INFN Catania)

20240625_UISS-Rotondo-Ientile (1).pdf

13:15 Roadmap per l'abilitazione di AlmaHealthDB su piattaforma INFN-CINECA

Speaker: Serena Moscato (UniBO)

ICSC_AHDB_2024_06_25_v2-Moscato.pptx

13:30 → 14:00 Tempo a disposizione per meeting individuali/di piccoli gruppi per chiarimenti scientifici e amministrativi con gli Spoke leader, i WP leader e l’amministrazione dello Spoke

14:00 → 15:00 Pranzo

15:00 → 16:00 WP2 Digital Twins and In Silico Trials

Convener: Marco Viceconti (UniBO)

20240625_Atax-BDT_meeting_CINECA.pdf

15:00 Atax-BDT

Speakers: Claudia Casellato (UniPV), Marta Gaviraghi (UniPV)

20240625_Atax-BDT_meeting_CINECA.pdf

15:10 BBCT-Hip, BoneStrength, Myobolica

Speaker: Sara Oliviero (UniBO)

pres SP8-WP2 UNIBO.pptx

15:20 IronAD

Speakers: Carla D'Agostino (UniTO), Fabrizio Pizzagalli (UniTO)

FPizzagalli_Progetto PNRR_CINECA_25_giugno_24.pdf

15:30 OptScaff

Speaker: Lorenzo Santoro (UniBA)

presentazione CINECA 25 giugno_finale.pptx

15:40 PHENSIM, scPHENSIM

Speaker: Antonio Di Maria (UniCT)

WP2 Antonio Di Maria.pptx

15:50 UISS-FLU

Speaker: Valentina Di Salvatore (UniCT)

UISS_FLU_GIU24.pptx

16:00 → 17:00 Tempo a disposizione per meeting individuali/di piccoli gruppi per chiarimenti scientifici e amministrativi con gli Spoke leader, i WP leader e l’amministrazione dello Spoke

17:00 → 17:30 Conclusioni e fine lavori